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1YDV

TRIOSEPHOSPHATE ISOMERASE (TIM)

Experimental procedure
Source typeROTATING ANODE
Source detailsRIGAKU RUH2R
Temperature [K]300
Detector technologyIMAGE PLATE
DetectorMARRESEARCH
Spacegroup nameC 1 2 1
Unit cell lengths98.910, 47.640, 118.430
Unit cell angles90.00, 108.26, 90.00
Refinement procedure
Resolution10.000 - 2.200
R-factor0.198
Rwork0.198
R-free0.25500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)TRYPANOSOMAL TIM
RMSD bond length0.007
RMSD bond angle23.600

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR (3.0)
Refinement softwareX-PLOR (3.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]15.0002.300
High resolution limit [Å]2.2002.200
Rmerge0.0890.252
Total number of observations39357

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Number of reflections25936
Completeness [%]92.083.9
Redundancy4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

7.523

*

10 MG/ML PROTEIN IN 12% PEG 6000 IN HEPES BUFFER PH 7.5, 1MM DTT EQUILIBRATED AGAINST 24% PEG 6000 IN HEPES BUFFER PH 7.5, 1MM DTT
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG600024 (%(w/v))
21reservoirHEPES
31reservoirDTT1 (mM)
41dropPEG600012 (%(w/v))
51dropHEPES
61dropDTT0.5 (mM)
71dropprotein10 (mg/ml)

220113

PDB entries from 2024-05-22

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