1YDV
TRIOSEPHOSPHATE ISOMERASE (TIM)
Experimental procedure
Source type | ROTATING ANODE |
Source details | RIGAKU RUH2R |
Temperature [K] | 300 |
Detector technology | IMAGE PLATE |
Detector | MARRESEARCH |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 98.910, 47.640, 118.430 |
Unit cell angles | 90.00, 108.26, 90.00 |
Refinement procedure
Resolution | 10.000 - 2.200 |
R-factor | 0.198 |
Rwork | 0.198 |
R-free | 0.25500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | TRYPANOSOMAL TIM |
RMSD bond length | 0.007 |
RMSD bond angle | 23.600 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR (3.0) |
Refinement software | X-PLOR (3.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.000 | 2.300 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.089 | 0.252 |
Total number of observations | 39357 * | |
Number of reflections | 25936 | |
Completeness [%] | 92.0 | 83.9 |
Redundancy | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 7.5 | 23 * | 10 MG/ML PROTEIN IN 12% PEG 6000 IN HEPES BUFFER PH 7.5, 1MM DTT EQUILIBRATED AGAINST 24% PEG 6000 IN HEPES BUFFER PH 7.5, 1MM DTT |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG6000 | 24 (%(w/v)) | |
2 | 1 | reservoir | HEPES | ||
3 | 1 | reservoir | DTT | 1 (mM) | |
4 | 1 | drop | PEG6000 | 12 (%(w/v)) | |
5 | 1 | drop | HEPES | ||
6 | 1 | drop | DTT | 0.5 (mM) | |
7 | 1 | drop | protein | 10 (mg/ml) |