Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1Y2K

Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 3,5-dimethyl-1-(3-nitro-phenyl)-1H-pyrazole-4-carboxylic acid ethyl ester

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]93
Detector technologyCCD
DetectorADSC QUANTUM 210
Wavelength(s)1.1
Spacegroup nameP 21 21 21
Unit cell lengths60.349, 78.886, 164.010
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution81.650 - 1.360
R-factor0.17521
Rwork0.175
R-free0.18765
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle1.060
Data scaling softwareELVES
Phasing softwareEPMR
Refinement softwareREFMAC (5.1.25)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]81.6501.395
High resolution limit [Å]1.3601.360
Rmerge0.0500.517
Number of reflections143297
<I/σ(I)>9.21.7
Completeness [%]90.186.4
Redundancy43.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7288PEG3350, ethylene glycol, isopropanol, glycerol and DTT , pH 6.0-8.5, VAPOR DIFFUSION, SITTING DROP, temperature 288K, pH 7.0

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon