1XJ9
Crystal structure of a partly self-complementary peptide nucleic acid (PNA) oligomer showing a duplex-triplex network
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE BM14 |
| Synchrotron site | ESRF |
| Beamline | BM14 |
| Temperature [K] | 293 |
| Detector technology | IMAGE PLATE |
| Collection date | 1998-02-17 |
| Detector | MARRESEARCH |
| Wavelength(s) | 1.0000 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 55.600, 41.900, 30.100 |
| Unit cell angles | 90.00, 117.70, 90.00 |
Refinement procedure
| Resolution | 27.000 - 2.600 |
| Rwork | 0.255 |
| R-free | 0.27700 |
| Structure solution method | crystal 1: single wavelength protocol. crystal 2: MAD protocol with data collected on 5-bromo-uracil derivative crystal at 0.9177, 0.9185, 0.9110, 0.9218 A. the condition for crystal 2 was as follows. collection data: 05-NOV-2000, temperature(kelvin): 110, PH: 4.80, the details of the source of radiation: synchrotron, EMBL/DESY, HAMBURG beamline BW7A |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.300 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | SOLVE |
| Refinement software | CNS |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 30.000 | 2.690 |
| High resolution limit [Å] | 2.600 | 2.600 |
| Rmerge | 0.045 | 0.183 |
| Number of reflections | 1839 | |
| <I/σ(I)> | 22.4 | 5.3 |
| Completeness [%] | 98.6 | 95.6 |
| Redundancy | 3 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 293 | crystal 1: magnesium chloride, PEG 8000, glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | magnesium chloride | ||
| 10 | 2 | 1 | H2O | ||
| 11 | 2 | 2 | isopropanol | ||
| 12 | 2 | 2 | calcium chloride | ||
| 13 | 2 | 2 | acetate | ||
| 14 | 2 | 2 | H2O | ||
| 2 | 1 | 1 | PEG 8000 | ||
| 3 | 1 | 1 | glycerol | ||
| 4 | 1 | 1 | H2O | ||
| 5 | 1 | 2 | PEG 8000 | ||
| 6 | 1 | 2 | H2O | ||
| 7 | 2 | 1 | isopropanol | ||
| 8 | 2 | 1 | calcium chloride | ||
| 9 | 2 | 1 | acetate |






