1WY5
Crystal structure of isoluecyl-tRNA lysidine synthetase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-05-16 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1.0 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 81.963, 81.963, 302.578 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.560 - 2.420 |
R-factor | 0.218 |
Rwork | 0.218 |
R-free | 0.25300 |
Structure solution method | Crystal 1: Single wavelength protocol, Crystal 2: Mad protocol |
RMSD bond length | 0.007 |
RMSD bond angle | 1.200 |
Data reduction software | HKL-2000 |
Data scaling software | CCP4 ((TRUNCATE)) |
Phasing software | SHARP |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.510 |
High resolution limit [Å] | 2.400 | 2.420 |
Number of reflections | 39996 | |
<I/σ(I)> | 53.1 | 5.82 |
Completeness [%] | 98.6 | 98.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 293 | sodium acetate, sodium formate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K |