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1VHF

Crystal structure of periplasmic divalent cation tolerance protein

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 32-ID
Synchrotron siteAPS
Beamline32-ID
Detector technologyCCD
DetectorMARRESEARCH
Wavelength(s)0.9795
Spacegroup nameP 63
Unit cell lengths52.499, 52.499, 66.635
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution37.530 - 1.540
Rwork0.185
R-free0.21500
Structure solution methodSe-Met SAD phasing
RMSD bond length0.013
RMSD bond angle2.300

*

Data reduction softwareMOSFLM
Data scaling softwareSCALA
Refinement softwareREFMAC (4.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.5301.620
High resolution limit [Å]1.5401.540
Rmerge0.0720.291
Number of reflections15362
<I/σ(I)>3011.2
Completeness [%]99.799.7
Redundancy21.615.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

7.5

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropHEPES10 (mM)pH7.5
21drop150 (mM)
31dropmethionine10 (mM)
41dropglycerol10 (%)
51dropdithiothreitol5 (mM)
61dropprotein10 (mg/ml)

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PDB entries from 2024-05-15

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