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1V1F

Structure of the Arabidopsis thaliana SOS3 complexed with Calcium(II) and Manganese(II) ions

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM16
Synchrotron siteESRF
BeamlineBM16
Temperature [K]100
Collection date2003-10-15
Spacegroup nameI 41
Unit cell lengths91.900, 91.900, 85.600
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 3.000
R-factor0.238
Rwork0.237
R-free0.26200
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)SOS3 CA(II) COMPLEX PDB ENTRY 1V1G
RMSD bond length0.016
RMSD bond angle1.926
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareCCP4
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.0003.160
High resolution limit [Å]3.0003.000
Rmerge0.0860.510
Number of reflections7041
<I/σ(I)>4.51.5
Completeness [%]97.797.7
Redundancy4.54.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION4.8PRIOR TO CRYSTALLIZATION THE PROTEIN WAS PREINCUBATED WITH 3.8 MM CACL2 PLUS 3.8 MM MNCL2 TO REACH A FINAL PROTEIN CONCENTRATION OF 10 MG/ML AND A PROTEIN:METAL ION RATIO 1:10:10. CRYSTALLIZATION EXPERIMENTS WERE CARRIED OUT AT ROOM TEMPERATURE. CRYSTALS WERE GROWN USING VAPOUR DIFFUSION TECHNIQUES FROM DROPS CONTAINING SOS3-CA-MN, RESERVOIR SOLUTIONS (24%(W/V) METHYL-PENTANEDIOL, 16%(W/V) POLYETHYLENE GLYCOL 4000 AND 0.1 NA-CITRATE PH 4.8) AND NAI 1M IN A RATIO 2:1:0.75

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PDB entries from 2024-05-15

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