Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1UYO

Translocator domain of autotransporter NalP from Neisseria meningitidis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE X11
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineX11
Temperature [K]100
Collection date2002-06-15
Spacegroup nameC 2 2 21
Unit cell lengths57.430, 84.893, 122.983
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 3.200
R-factor0.219
Rwork0.215
R-free0.29800
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.017
RMSD bond angle1.920

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareREFMAC (5.1.19)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0003.310
High resolution limit [Å]3.2003.200
Rmerge0.150

*

0.359

*

Total number of observations45309

*

Number of reflections5100
<I/σ(I)>9.43
Completeness [%]98.694.8
Redundancy8.93.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

7.528

*

88 MM TRIS-HCL, PH 7.0, 9% PEG2000MME 18% MPD. PROTEIN WAS CRYSTALLISED IN THE PRESENSE OF 0.06%, N-DECYLPENTAOXYETHYLENE AND 0.5% HEPTYL-B-GLUCOPYRANOSIDE AND 10 MM DTT
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropSe-Met NalP~beta8.5 (mg/ml)
21dropTris-HCl10 (mM)pH7.5
31drop0.06 (%(w/v))
41dropheptyl-beta-glucopyranoside0.5 (%(w/v))
51reservoirTris-HCl88 (mM)pH7.0
61reservoirPEG2000 MME9 (%(w/v))
71reservoirMPD18 (%(v/v))

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon