Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1SGK

NUCLEOTIDE-FREE DIPHTHERIA TOXIN

Experimental procedure
Temperature [K]94
Detector technologyIMAGE PLATE
Collection date1994-04-15
DetectorRIGAKU
Spacegroup nameC 1 2 1
Unit cell lengths105.200, 91.200, 65.300
Unit cell angles90.00, 94.20, 90.00
Refinement procedure
Resolution8.000 - 2.300
R-factor0.182
Rwork0.182
R-free0.28200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)DT-DIMER APUP COMPLEX (PDB ENTRY 1DDT)
RMSD bond length0.010
RMSD bond angle1.500
Data reduction softwareR-AXIS
Data scaling softwareR-AXIS
Phasing softwareX-PLOR (3.1)
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]2.400
High resolution limit [Å]2.300

*

2.300
Rmerge0.0660.239
Total number of observations74281

*

Number of reflections26627
<I/σ(I)>9.62.6
Completeness [%]95.792.7
Redundancy2.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5HANGING DROP, 12 % PEG8000, 0.43M NACL, 0.043M TRIS, PH 7.5, vapor diffusion - hanging drop
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG800012 (%(w/v))
21reservoir0.43 (M)
31reservoirTris0.043 (M)
41dropDT25 (mg/ml)
51dropPEG800014 (%(w/v))
61drop0.5 (M)
71dropTris0.05 (M)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon