1SGK
NUCLEOTIDE-FREE DIPHTHERIA TOXIN
Experimental procedure
Temperature [K] | 94 |
Detector technology | IMAGE PLATE |
Collection date | 1994-04-15 |
Detector | RIGAKU |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 105.200, 91.200, 65.300 |
Unit cell angles | 90.00, 94.20, 90.00 |
Refinement procedure
Resolution | 8.000 - 2.300 |
R-factor | 0.182 |
Rwork | 0.182 |
R-free | 0.28200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | DT-DIMER APUP COMPLEX (PDB ENTRY 1DDT) |
RMSD bond length | 0.010 |
RMSD bond angle | 1.500 |
Data reduction software | R-AXIS |
Data scaling software | R-AXIS |
Phasing software | X-PLOR (3.1) |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 2.400 | |
High resolution limit [Å] | 2.300 * | 2.300 |
Rmerge | 0.066 | 0.239 |
Total number of observations | 74281 * | |
Number of reflections | 26627 | |
<I/σ(I)> | 9.6 | 2.6 |
Completeness [%] | 95.7 | 92.7 |
Redundancy | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | HANGING DROP, 12 % PEG8000, 0.43M NACL, 0.043M TRIS, PH 7.5, vapor diffusion - hanging drop |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG8000 | 12 (%(w/v)) | |
2 | 1 | reservoir | 0.43 (M) | ||
3 | 1 | reservoir | Tris | 0.043 (M) | |
4 | 1 | drop | DT | 25 (mg/ml) | |
5 | 1 | drop | PEG8000 | 14 (%(w/v)) | |
6 | 1 | drop | 0.5 (M) | ||
7 | 1 | drop | Tris | 0.05 (M) |