1S8I
Crystal structure of Lys49-Phospholipase A2 from Agkistrodon contortrix laticinctus, second fatty acid free form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU ULTRAX 18 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2002-10-20 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 70.570, 70.570, 57.450 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.500 * - 1.610* |
R-factor | 0.1867 |
Rwork | 0.186 |
R-free | 0.20500 * |
Structure solution method | Sulfur-SAD at CuKa wavelength |
RMSD bond length | 0.009 |
RMSD bond angle | 1.295 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHELXD |
Refinement software | REFMAC (5.1.24) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.500 * | 1.650 |
High resolution limit [Å] | 1.610 * | 1.610 * |
Rmerge | 0.061 | 0.314 |
Total number of observations | 526515 * | |
Number of reflections | 35959 * | |
<I/σ(I)> | 49.5 | 8.1 |
Completeness [%] | 99.8 | 99.8 |
Redundancy | 14.6 | 14.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | TRIS-HCl, ammonium sulfate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | ammonium sulfate | 2.0 (M) | |
2 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH8.5 |
3 | 1 | drop | protein | 10 (mg/ml) |