1S8H
Crystal structure of Lys49-Phospholipase A2 from Agkistrodon contortrix laticinctus, first fatty acid free form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE D03B-MX1 |
Synchrotron site | LNLS |
Beamline | D03B-MX1 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2002-02-10 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.544 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 70.505, 70.505, 57.146 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 * - 1.800 |
R-factor | 0.19268 |
Rwork | 0.191 |
R-free | 0.22900 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Myotoxin ACL I |
RMSD bond length | 0.007 |
RMSD bond angle | 1.098 |
Data reduction software | MOSFLM |
Data scaling software | CCP4 ((SCALA)) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.1.24) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 * | 1.890 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.059 | 0.361 |
Total number of observations | 119620 * | |
Number of reflections | 13872 * | |
<I/σ(I)> | 8.3 | 2 |
Completeness [%] | 97.5 | 99.6 |
Redundancy | 3.9 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | TRIS-HCl, ammonium sulfate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | ammonium sulfate | 2.0 (M) | |
2 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH8.5 |
3 | 1 | drop | protein | 16 (mg/ml) |