1RI7
crystal structure of a protein in the LRP/ASNC family from the hyperthermophilic archaeon Pyrococcus sp. OT3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-18B |
Synchrotron site | Photon Factory |
Beamline | BL-18B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-01-20 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.0 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 130.910, 130.910, 47.370 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.000 - 2.700 |
R-factor | 0.246 |
Rwork | 0.246 |
R-free | 0.31400 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 22.700 * |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | AMoRE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.000 | 2.850 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.059 | 0.261 |
Number of reflections | 6914 | |
<I/σ(I)> | 11 | 2.9 |
Completeness [%] | 99.3 | 98 |
Redundancy | 11.7 | 11.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 * | 20 * | ammonium sulfate, tris[hydroxymethyl]aminomethan, glycerol, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 20 (mg/ml) | |
2 | 1 | drop | sodium phosphate | 50 (mM) | pH8.0 |
3 | 1 | drop | 300 (mM) | ||
4 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH8.5 |
5 | 1 | reservoir | ammonium sulfate | 1.5 (M) | |
6 | 1 | reservoir | glycerol | 12 (%(v/v)) |