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1R7Y

Glycosyltransferase A in complex with 3-amino-acceptor analog inhibitor and uridine diphosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X8C
Synchrotron siteNSLS
BeamlineX8C
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 4
Wavelength(s)1.15
Spacegroup nameC 2 2 21
Unit cell lengths52.500, 149.400, 79.400
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000

*

- 1.750
Rwork0.208
R-free0.21500

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle1.300
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareCNS (1.1)
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.000

*

High resolution limit [Å]1.750
Rmerge0.046

*

0.148

*

Number of reflections32164

*

Completeness [%]99.1

*

99

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5

*

18

*

Patenaude, S.I., (2002) Nat. Struct. Biol., 9, 685.

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein6-8 (mg/ml)
101reservoirADA50 (mM)pH7.5
111reservoir10 (mM)
121reservoirammonium sulfate100 (mM)
131reservoirMPD5 (%(v/v))
141reservoirglycerol10 (%(v/v))
151reservoirPEG40008-10 (%(w/v))
21dropADA70 (mM)pH7.5
31dropsodium acetate50 (mM)pH4.6
41drop40 (mM)
51drop5-8 (mM)
61dropMPD2.5 (%(v/v))
71dropglycerol5 (%(v/v))
81dropPEG40002 (%(w/v))
91drop3-chloro-Hg-2-methoxy-propylurea0.3-0.5 (mM)

245663

PDB entries from 2025-12-03

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