1QZ1
Crystal Structure of the Ig 1-2-3 fragment of NCAM
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I711 |
Synchrotron site | MAX II |
Beamline | I711 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2000-11-06 |
Detector | MARRESEARCH |
Wavelength(s) | 1.0526 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 51.440, 107.760, 149.300 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.640 - 2.000 |
Rwork | 0.218 |
R-free | 0.23800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1epf |
RMSD bond length | 0.008 |
RMSD bond angle | 27.500 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.039 | 0.209 |
Total number of observations | 164206 * | |
Number of reflections | 27881 | |
<I/σ(I)> | 19.6 | 1.4 |
Completeness [%] | 99.2 | 99.4 |
Redundancy | 5.9 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 * | 18 * | 14-17% PEG 4000, 450 mM Li sulfate, 100 mM Na acetate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 * | 18 * | 14-17% PEG 4000, 450 mM Li sulfate, 100 mM Na acetate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 4 (mg/ml) | |
2 | 1 | drop | sodium phosphate | 5 (mM) | |
3 | 1 | drop | 150 (mM) | pH7.4 | |
4 | 1 | reservoir | PEG4000 | 14-17 (%(w/v)) | |
5 | 1 | reservoir | lithium sulfate | 450 (mM) | |
6 | 1 | reservoir | sodium acetate | 100 (mM) | pH5.2 |