1QXM
Crystal structure of a hemagglutinin component (HA1) from type C Clostridium botulinum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 138.173, 62.332, 82.321 |
Unit cell angles | 90.00, 104.53, 90.00 |
Refinement procedure
Resolution | 25.000 * - 1.700 |
R-factor | 0.177 |
Rwork | 0.177 |
R-free | 0.20100 |
Structure solution method | SIRAS |
RMSD bond length | 0.005 |
RMSD bond angle | 25.100 * |
Data scaling software | SCALEPACK |
Phasing software | MLPHARE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 1.760 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.042 * | 0.150 * |
Total number of observations | 203352 * | |
Number of reflections | 71843 | |
<I/σ(I)> | 23.2 | 8 |
Completeness [%] | 96.4 | 87.6 |
Redundancy | 2.8 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 5.5 | 296 | MES, PEG8000, MgCl2, pH 5.5, SIRSAS, temperature 296K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | MES | 20 (mM) | pH5.5 |
2 | 1 | drop | protein | 25 (mg/ml) | |
3 | 1 | reservoir | MES | 0.1 (M) | pH5.5 |
4 | 1 | reservoir | 100 (mM) | ||
5 | 1 | reservoir | PEG8000 | 10 (%) |