1QLL
Piratoxin-II (Prtx-II) - a K49 PLA2 from Bothrops pirajai
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE D03B-MX1 |
Synchrotron site | LNLS |
Beamline | D03B-MX1 |
Temperature [K] | 277 |
Detector technology | IMAGE PLATE |
Collection date | 1997-09-15 |
Detector | MARRESEARCH |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.190, 60.360, 58.740 |
Unit cell angles | 90.00, 96.05, 90.00 |
Refinement procedure
Resolution | 10.000 - 2.040 |
R-factor | 0.176 * |
Rwork | 0.176 |
R-free | 0.26800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1clp |
RMSD bond length | 0.015 |
RMSD bond angle | 0.038 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.110 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.070 * | 0.260 * |
Total number of observations | 23809 * | |
Number of reflections | 6934 | |
<I/σ(I)> | 12.4 | 2.57 |
Completeness [%] | 90.2 | 72.5 |
Redundancy | 3.43 | 1.53 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 8.5 | 277 | 28% PEG 3350, 0.25 M LITHIUM SULFATE 0.1 M TRIS-HCL PH 8.5, AT 277 K FOR APPROX. 40 DAYS |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 20 (mg/ml) | |
2 | 1 | reservoir | PEG3350 | 28 (%) | |
3 | 1 | reservoir | 0.25 (M) | ||
4 | 1 | reservoir | Tris-HCl | 0.1 (M) |