Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1QLL

Piratoxin-II (Prtx-II) - a K49 PLA2 from Bothrops pirajai

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE D03B-MX1
Synchrotron siteLNLS
BeamlineD03B-MX1
Temperature [K]277
Detector technologyIMAGE PLATE
Collection date1997-09-15
DetectorMARRESEARCH
Spacegroup nameP 1 21 1
Unit cell lengths46.190, 60.360, 58.740
Unit cell angles90.00, 96.05, 90.00
Refinement procedure
Resolution10.000 - 2.040
R-factor0.176

*

Rwork0.176
R-free0.26800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1clp
RMSD bond length0.015
RMSD bond angle0.038
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.110
High resolution limit [Å]2.0402.040
Rmerge0.070

*

0.260

*

Total number of observations23809

*

Number of reflections6934
<I/σ(I)>12.42.57
Completeness [%]90.272.5
Redundancy3.431.53
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

8.527728% PEG 3350, 0.25 M LITHIUM SULFATE 0.1 M TRIS-HCL PH 8.5, AT 277 K FOR APPROX. 40 DAYS
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein20 (mg/ml)
21reservoirPEG335028 (%)
31reservoir0.25 (M)
41reservoirTris-HCl0.1 (M)

238895

PDB entries from 2025-07-16

PDB statisticsPDBj update infoContact PDBjnumon