Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1Q85

Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima (Cd2+ complex, Se-Met)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Detector technologyCCD
Collection date2003-03-12
DetectorMARRESEARCH
Wavelength(s)1.000
Spacegroup nameP 1 21 1
Unit cell lengths60.300, 86.170, 125.880
Unit cell angles90.00, 100.39, 90.00
Refinement procedure
Resolution20.000 - 2.000
R-factor0.268
Rwork0.243
R-free0.28000

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006

*

RMSD bond angle1.288

*

Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.090
High resolution limit [Å]2.0002.000
Rmerge0.058

*

0.209

*

Number of reflections87460

*

Completeness [%]99.0

*

99.3

*

Redundancy7.5

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.74

*

propylene glycol, glycerol, PEG 8000, citrate, 1,2,3-heptanetriol, cadmium, pH 5.7, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11drop10 (mM)
21drop1,2,3-heptanetriol1.25 (%(w/v))
31reservoir1,2-propanediol25 (%)
41reservoirglycerol10 (%)
51reservoirPEG30005 (%)
61reservoirsodium citrate100 (mM)pH5.30

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon