Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1Q7D

Structure of the integrin alpha2beta1 binding collagen peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID13
Synchrotron siteESRF
BeamlineID13
Temperature [K]85
Detector technologyCCD
Collection date2001-01-06
DetectorMARRESEARCH
Wavelength(s)1.0
Spacegroup nameC 2 2 21
Unit cell lengths29.600, 135.800, 25.400
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution6.000 - 1.800
R-factor0.2363
Rwork0.236
R-free0.25900

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.610

*

Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.900
High resolution limit [Å]1.8001.800
Rmerge0.1050.344

*

Number of reflections5060
<I/σ(I)>12.95
Completeness [%]98.2

*

95.2
Redundancy2.9

*

4.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5

*

4

*

PEG 8K, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein15 (mg/ml)
21reservoircacodylate0.1 (M)pH6.5
31reservoirsodium acetate0.2 (M)
41reservoirPEG800030 (%(w/v))

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon