1PJH
Structural studies on delta3-delta2-enoyl-CoA isomerase: the variable mode of assembly of the trimeric disks of the crotonase superfamily
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X11 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X11 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-11-10 |
Detector | MARRESEARCH |
Wavelength(s) | 0.801 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 116.243, 116.243, 216.287 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.100 |
R-factor | 0.168 |
Rwork | 0.168 |
R-free | 0.18900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1hnu |
RMSD bond length | 0.011 |
RMSD bond angle | 1.200 * |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | AMoRE |
Refinement software | REFMAC (5.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.200 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.040 | 0.199 |
Total number of observations | 690091 * | |
Number of reflections | 86026 | |
<I/σ(I)> | 28.5 | 10.5 |
Completeness [%] | 98.9 | 93.4 |
Redundancy | 8.0 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 * | 295 | ADA/NaOH, magnesium sulphate, ammonium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 2.5 (mg/ml) | |
2 | 1 | drop | potassium phosphate | 20 (mM) | pH7.2 |
3 | 1 | drop | 450 (mM) | ||
4 | 1 | drop | EDTA | 1 (mM) | |
5 | 1 | drop | EGTA | 1 (mM) | |
6 | 1 | drop | benzamidine HCl | 0.5 (mM) | |
7 | 1 | reservoir | ADA | 0.1 (M) | pH7.0 |
8 | 1 | reservoir | 0.1 (M) | ||
9 | 1 | reservoir | ammonium sulfate | 1.7-2.2 (M) |