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1PB3

Sites of binding and orientation in a four location model for protein stereospecificity.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date1999-01-01
DetectorADSC QUANTUM 4
Wavelength(s)1.000
Spacegroup nameP 43 21 2
Unit cell lengths103.669, 103.669, 150.124
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.000

*

- 1.700
R-factor0.194
Rwork0.194
R-free0.21800

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.014
RMSD bond angle1.620

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareEPMR
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0001.760
High resolution limit [Å]1.7001.700
Rmerge0.0680.500
Total number of observations1751210

*

Number of reflections90256

*

<I/σ(I)>325.8
Completeness [%]99.9

*

100
Redundancy19
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.4

*

295IDH, stored in metal-free final buffer, was diluted to 25, 30, 35 and 40 mg/ml using metal-free 2X buffer; (70mM Na2HPO4 , 18 mM citric acid, 200 mM NaCl, 0.4 mM DTT, pH 5.4). and was crystallized from hanging drops using 5 l each of these IDH solutions and 5 l each of 34, 36, 38, 40, 42, and 44 % (NH4)2SO4 solutions in crystallization buffer (35mM Na2HPO4 , 9 mM citric acid, 100 mM NaCl, 0.2 mM DTT at pH 5.4). , pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 22K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein40 (mg/ml)
21reservoir35 (mM)
31reservoircitric acid9 (mM)
41reservoir100 (mM)
51reservoirdithiothreitol0.2 (mM)pH5.4

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PDB entries from 2025-06-11

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