Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1ODU

CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE IN COMPLEX WITH FUCOSE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-2
Synchrotron siteESRF
BeamlineID14-2
Temperature [K]100
Detector technologyCCD
Collection date2001-09-16
DetectorADSC CCD
Spacegroup nameH 3 2
Unit cell lengths179.080, 179.080, 174.692
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000

*

- 2.800
R-factor0.203
Rwork0.201
R-free0.23000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)NATIVE ALPHA-L-FUCOSIDASE PDB ENTRY 1HL8
RMSD bond length0.007
RMSD bond angle0.990

*

Data reduction softwareDENZO
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]57.000

*

2.870
High resolution limit [Å]2.8002.800
Rmerge0.0560.442
Total number of observations99148

*

Number of reflections24598
<I/σ(I)>6.81.6
Completeness [%]98.198.1
Redundancy3.93.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

820

*

18% PEG600, 5% JEFFAMINE M-600, 100 MM TRIS-HCL PH 8.0, PROTEIN CONCENTRATION 5 MG/ML FUCOSE WAS INTRODUCED BY SHORT SOAKING OF A NATIVE
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein5.0 (mg/ml)
21reservoirPEG600018 (%(w/v))
31reservoirTris-HCl100 (mM)pH8.0
41reservoirJeffamine M-6005 (%)

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon