1ODL
PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-D |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2003-01-15 |
Detector | RIGAKU IMAGE PLATE, RAXIS-VII |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 132.002, 132.002, 170.145 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.990 - 2.100 |
R-factor | 0.187 |
Rwork | 0.187 |
R-free | 0.23400 |
Structure solution method | OTHER |
RMSD bond length | 0.005 |
RMSD bond angle | 22.900 * |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | CNS |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.100 | 0.331 |
Number of reflections | 86945 | |
<I/σ(I)> | 15.2 | 5.05 |
Completeness [%] | 98.7 | 97.7 |
Redundancy | 6.59 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | microseeding * | 6.3 | 291 | MICROBATCH METHOD UNDER OIL WAS USED.15.1 MG/ML OF PROTEIN SOLUTION CONTAINING 0.02M DTT WAS MIXED WITH 1.65M SODIUM ACETATE AND 0.1M MES PH 6.3. THE CRYSTALLIZATION TEMPERATURE WAS 291 K. PARATONE-N OIL MIXED WITH 10% W/W OF GLYCEROL WAS USED FOR CRYOPROTECTION SULFATE ION BOUND CRYSTALS WERE OBTAINED BY 7 H SOAKING OF NATIVE CRYSTALS IN SOLUTION CONTAINING 1.2M SODIUM ACETATE PH 6.3 AND 20MM AMMONIUM SULFATE |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 15 (mg/ml) | |
2 | 1 | drop | dithiothreitol | 0.02 (M) | |
3 | 1 | reservoir | sodium acetate | 1.65 (M) | |
4 | 1 | reservoir | MES | 0.1 (M) |