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1O9N

Crystal structure of the K62A mutant of Malonamidase E2 from Bradyrhizobium japonicum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorRIGAKU IMAGE PLATE
Spacegroup nameP 21 21 2
Unit cell lengths103.246, 94.498, 75.430
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.000
R-factor0.173
Rwork0.173
R-free0.23700

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Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1GR8
RMSD bond length0.003

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RMSD bond angle1.034

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.070
High resolution limit [Å]2.0002.000
Rmerge0.069

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0.217

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Total number of observations384083

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Number of reflections50620
<I/σ(I)>12.43.2
Completeness [%]89.076.1
Redundancy32
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

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720% POLYETHYLENE GLYCOL 1000, 100 MM TRIS, PH 7.0
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21reservoirPEG100020 (%)
31reservoirTris-HCl0.1 (M)pH7.0

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PDB entries from 2024-05-15

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