1O89
Crystal structure of E. COLI K-12 yhdH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-1 |
Synchrotron site | ESRF |
Beamline | ID14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-03-08 |
Detector | ADSC CCD |
Spacegroup name | P 43 2 2 |
Unit cell lengths | 55.671, 55.671, 201.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 12.000 - 2.250 |
R-factor | 0.20087 |
Rwork | 0.197 |
R-free | 0.23670 * |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | YHDH DETERMINED BY MAD |
RMSD bond length | 0.011 * |
RMSD bond angle | 1.160 * |
Data reduction software | DENZO |
Data scaling software | SCALA |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 * | 2.310 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.049 | 0.450 * |
Total number of observations | 426724 * | |
Number of reflections | 15944 * | |
<I/σ(I)> | 11.7 | 1.8 |
Completeness [%] | 99.1 | 99.7 |
Redundancy | 8.6 | 8.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 7.5 | 39 % PEG 600, 0.1 M HEPES PH 7.5 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | PEG600 | 39 (%) | |
2 | 1 | drop | HEPES | 0.1 (%(w/v)sat) | pH7.5 |
3 | 1 | drop | protein | 6 (mg/ml) | |
4 | 1 | drop | NADP | 5 (mM) | |
5 | 1 | drop | 0.1 (mM) | ||
6 | 1 | reservoir | PEG8000 | 8.5 (%) | |
7 | 1 | reservoir | sodium acetate | 0.1 (M) | pH5.5 |
8 | 1 | reservoir | 0.01 (mM) |