1NR1
Crystal structure of the R463A mutant of human Glutamate dehydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2000-06-06 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 96.920, 98.640, 124.260 |
Unit cell angles | 86.48, 69.69, 60.87 |
Refinement procedure
Resolution | 20.000 * - 3.300 |
R-factor | 0.222 |
Rwork | 0.222 |
R-free | 0.27600 * |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.017 * |
RMSD bond angle | 1.980 * |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 * | 3.450 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.032 * | 0.137 * |
Number of reflections | 50903 | |
Completeness [%] | 64.6 * | 62.9 * |
Redundancy | 1.4 * | 1.3 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.8 | 298 | sodium phosphate, PEG 8000, BOG, sodium chloride, MPD, sodium azide, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | sodium phosphate | 0.1 (M) | pH6.8 |
2 | 1 | drop | protein | 26 (mg/ml) | |
3 | 1 | reservoir | PEG8000 | 10 (%(w/v)) | |
4 | 1 | reservoir | 0.1 (M) | ||
5 | 1 | reservoir | octyl-beta-glucopyranoside | 1.3 (%(w/v)) | |
6 | 1 | reservoir | MPD | 7.5 (%(v/v)) | |
7 | 1 | reservoir | sodium phosphate | 0.1 (M) | pH6.8 |
8 | 1 | reservoir | sodium azide | 1 (mM) |