1NQZ
The structure of a CoA pyrophosphatase from D. Radiodurans complexed with a magnesium ion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 90 |
Detector technology | CCD |
Collection date | 2002-10-20 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.009 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 40.618, 94.066, 43.664 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 1.700 |
Rwork | 0.216 |
R-free | 0.25800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1nqy |
RMSD bond length | 0.012 |
RMSD bond angle | 1.380 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | |
High resolution limit [Å] | 1.700 | |
Rmerge | 0.062 * | |
Total number of observations | 100105 * | |
Number of reflections | 19112 | |
<I/σ(I)> | 15.4 | |
Completeness [%] | 99.6 | 97.5 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 7.5 * | 20 * | PEG1500, MES buffer, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 7 (mg/ml) | |
2 | 1 | drop | Tris | 50 (mM) | pH7.5 |
3 | 1 | drop | EDTA | 1 (mM) | |
4 | 1 | reservoir | PEG1500 | 27 (%) | |
5 | 1 | reservoir | sodium citrate | 100 (mM) | pH6.0 |