Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NOV

NODAMURA VIRUS

Experimental procedure
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]295
Detector technologyIMAGE PLATE
Collection date1992-09
DetectorFILM
Spacegroup nameP 1 21 1
Unit cell lengths562.090, 354.130, 612.770
Unit cell angles90.00, 110.89, 90.00
Refinement procedure
Resolution8.000 - 3.500
R-factor0.296
Rwork0.296
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)FLOCK HOUSE VIRUS
RMSD bond length0.014
RMSD bond angle26.800

*

Data reduction softwareOSC (PROGRAM (PURDUE))
Data scaling softwareOSC (PROGRAM (PURDUE))
Phasing softwareX-PLOR (3.8)
Refinement softwareX-PLOR (3.8)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0003.700
High resolution limit [Å]3.3003.300
Rmerge0.141
Number of reflections1708846
<I/σ(I)>11.78.5
Completeness [%]49.939
Redundancy1.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP610 - 15 MICRO LITRES OF 7MG/ML OF VIRUS IN PHOSPHATE BUFFER MIXED WITH ONE VOLUME OF CITRATE BUFFER AND EQUILIBRATED VERSES 20 ML OF CITRATE BUFFER (0.24 - 0.28 M SODIUM CITRATE, PH ADJUSTED TO 6.0 WITH ACETIC ACID, OR 0.24 M POTASSIUM CITRATE PH 6.0, BOTH WITH 0.1% BETA-OCTYL GLUCOPYRANOSIDE. CRYSTALS GROWN FROM VAPOR DIFFUSION USING SITTING DROP METHOD., vapor diffusion - sitting drop
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein7 (mg/ml)
21dropphosphate
31reservoirsodium citrate0.24-0.28 (M)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon