1NOV
NODAMURA VIRUS
Experimental procedure
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 295 |
Detector technology | IMAGE PLATE |
Collection date | 1992-09 |
Detector | FILM |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 562.090, 354.130, 612.770 |
Unit cell angles | 90.00, 110.89, 90.00 |
Refinement procedure
Resolution | 8.000 - 3.500 |
R-factor | 0.296 |
Rwork | 0.296 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | FLOCK HOUSE VIRUS |
RMSD bond length | 0.014 |
RMSD bond angle | 26.800 * |
Data reduction software | OSC (PROGRAM (PURDUE)) |
Data scaling software | OSC (PROGRAM (PURDUE)) |
Phasing software | X-PLOR (3.8) |
Refinement software | X-PLOR (3.8) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 3.700 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.141 | |
Number of reflections | 1708846 | |
<I/σ(I)> | 11.7 | 8.5 |
Completeness [%] | 49.9 | 39 |
Redundancy | 1.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 10 - 15 MICRO LITRES OF 7MG/ML OF VIRUS IN PHOSPHATE BUFFER MIXED WITH ONE VOLUME OF CITRATE BUFFER AND EQUILIBRATED VERSES 20 ML OF CITRATE BUFFER (0.24 - 0.28 M SODIUM CITRATE, PH ADJUSTED TO 6.0 WITH ACETIC ACID, OR 0.24 M POTASSIUM CITRATE PH 6.0, BOTH WITH 0.1% BETA-OCTYL GLUCOPYRANOSIDE. CRYSTALS GROWN FROM VAPOR DIFFUSION USING SITTING DROP METHOD., vapor diffusion - sitting drop |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 7 (mg/ml) | |
2 | 1 | drop | phosphate | ||
3 | 1 | reservoir | sodium citrate | 0.24-0.28 (M) |