Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NN5

Crystal structure of human thymidylate kinase with d4TMP + AppNHp

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE X11
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineX11
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorMARRESEARCH
Wavelength(s)0.9076
Spacegroup nameP 43 21 2
Unit cell lengths101.100, 101.100, 49.800
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.500 - 1.500
Rwork0.192
R-free0.21500
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.009

*

RMSD bond angle1.600

*

Data reduction softwareXDS
Data scaling softwareXDS
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.5001.600
High resolution limit [Å]1.5001.500
Rmerge0.0500.311

*

Total number of observations182998

*

Number of reflections41213
<I/σ(I)>15.113.65
Completeness [%]98.499.8
Redundancy4.44.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP829315-20% PEG 3350, 100 mM Tris/HCl, pH 8.0, 5% filtered dead sea water, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein2 (mM)
21dropAppNHp2 (mM)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon