Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NK6

CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2000-11-27
DetectorRIGAKU RAXIS IV
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths87.863, 93.682, 105.452
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000

*

- 2.100
R-factor0.241
Rwork0.213
R-free0.25900

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2bdp
RMSD bond length0.006
RMSD bond angle22.000

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.000

*

2.180
High resolution limit [Å]2.1002.100
Rmerge0.102

*

0.531

*

Total number of observations245582

*

Number of reflections51291
<I/σ(I)>15.52.6
Completeness [%]99.799.3
Redundancy4.84.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.8290Johnson, S.J., (2003) Proc.Natl.Acad.Sci.USA, 100, 3895.

*

Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111AMMONIUM SULFATE
211MAGNESIUM SULFATE
311MPD
411MES
511water
612AMMONIUM SULFATE
712MAGNESIUM SULFATE
812MPD
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein12 (mg/ml)
21reservoirammonium sulfate49 (%sat)
31reservoir2.5 (%(v/v))
41reservoir100 (mM)pH5.8
51reservoir10 (mM)

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon