1NK4
GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-C |
Synchrotron site | APS |
Beamline | 14-BM-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-04-20 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.9000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.888, 93.674, 105.337 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 * - 1.600 |
R-factor | 0.234 |
Rwork | 0.220 |
R-free | 0.25400 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bdp |
RMSD bond length | 0.005 |
RMSD bond angle | 22.300 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 * | 1.660 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.064 * | 0.667 * |
Total number of observations | 664723 * | |
Number of reflections | 113762 | |
<I/σ(I)> | 19.3 | 1.9 |
Completeness [%] | 98.4 | 90.3 |
Redundancy | 5.8 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.8 | 290 | Johnson, S.J., (2003) Proc.Natl.Acad.Sci.USA, 100, 3895. * |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | AMMONIUM SULFATE | ||
2 | 1 | 1 | MAGNESIUM SULFATE | ||
3 | 1 | 1 | MPD | ||
4 | 1 | 1 | MES | ||
5 | 1 | 1 | water | ||
6 | 1 | 2 | AMMONIUM SULFATE | ||
7 | 1 | 2 | MAGNESIUM SULFATE | ||
8 | 1 | 2 | MPD |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 12 (mg/ml) | |
2 | 1 | reservoir | ammonium sulfate | 49 (%sat) | |
3 | 1 | reservoir | 2.5 (%(v/v)) | ||
4 | 1 | reservoir | 100 (mM) | pH5.8 | |
5 | 1 | reservoir | 10 (mM) |