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1NK0

ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12B
Synchrotron siteNSLS
BeamlineX12B
Temperature [K]100
Detector technologyCCD
Collection date2000-10-13
DetectorADSC QUANTUM 4
Wavelength(s)1.0001
Spacegroup nameP 21 21 21
Unit cell lengths88.124, 93.609, 104.746
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000

*

- 1.700
R-factor0.203
Rwork0.189
R-free0.21300

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2bdp
RMSD bond length0.008
RMSD bond angle22.300

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.760
High resolution limit [Å]1.7001.700
Rmerge0.047

*

0.260

*

Total number of observations292563

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Number of reflections94629
<I/σ(I)>20.23.3
Completeness [%]98.292.9
Redundancy3.12.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.8290Johnson, S.J., (2003) Proc.Natl.Acad.Sci.USA, 100, 3895.

*

1VAPOR DIFFUSION, HANGING DROP5.8290Johnson, S.J., (2003) Proc.Natl.Acad.Sci.USA, 100, 3895.

*

Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111AMMONIUM SULFAT
211MAGNESIUM SULFATE
311MPD
411MES
511water
612AMMONIUM SULFATE
712MAGNESIUM SULFATE
812MPD
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein12 (mg/ml)
21reservoirammonium sulfate49 (%sat)
31reservoir2.5 (%(v/v))
41reservoir100 (mM)pH5.8
51reservoir10 (mM)

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PDB entries from 2024-12-25

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