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1NJX

THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2002-12-06
DetectorMARRESEARCH
Wavelength(s)1.0064
Spacegroup nameP 21 21 21
Unit cell lengths88.331, 93.554, 104.898
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000

*

- 1.650
R-factor0.226
Rwork0.211
R-free0.23900

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2bdp
RMSD bond length0.005
RMSD bond angle22.300

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.000

*

1.710
High resolution limit [Å]1.6501.650
Rmerge0.071

*

0.468

*

Total number of observations603440

*

Number of reflections100253
<I/σ(I)>22.11.7
Completeness [%]95.269
Redundancy62.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.8290Johnson, S.J., (2003) Proc.Natl.Acad.Sci.USA, 100, 3895.

*

1VAPOR DIFFUSION, HANGING DROP5.8290Johnson, S.J., (2003) Proc.Natl.Acad.Sci.USA, 100, 3895.

*

Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111AMMONIUM SULFATE
211MAGNESIUM SULFATE
311MPD
411MES
511WATER
612AMMONIUM SULFATE
712MAGNESIUM SULFATE
812MPD
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein12 (mg/ml)
21reservoirammonium sulfate49 (%sat)
31reservoir2.5 (%(v/v))
41reservoir100 (mM)pH5.8
51reservoir10 (mM)

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PDB entries from 2024-05-15

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