1NGT
The Role of Minor Groove Functional Groups in DNA Hydration
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | SIEMENS |
Temperature [K] | 163 |
Detector technology | CCD |
Collection date | 2000-01-01 |
Detector | SIEMENS |
Wavelength(s) | 0.7107 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 25.170, 41.050, 65.720 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 10.000 - 2.040 |
R-factor | 0.223 |
Rwork | 0.207 |
R-free | 0.28150 * |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.220 * |
Data reduction software | SAINT |
Data scaling software | SAINT |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 10.000 | 2.110 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.084 * | |
Total number of observations | 30312 * | |
Number of reflections | 4393 | |
Completeness [%] | 74 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 22 * | sodium cacodylate, MPD, magnesium chloride, spermine tetrahydrochloride, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | sodium cacodylate | ||
2 | 1 | 1 | MPD | ||
3 | 1 | 1 | magnesium chloride | ||
4 | 1 | 1 | spermine tetrahydrochloride | ||
5 | 1 | 2 | sodium cacodylate | ||
6 | 1 | 2 | MPD | ||
7 | 1 | 2 | magnesium chloride |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 1.9 (mM) | |
2 | 1 | drop | sodium cacodylate | 31 (mM) | pH6.5 |
3 | 1 | drop | 19 (mM) | ||
4 | 1 | drop | MPD | 6.9 (%) | |
5 | 1 | drop | spermine tetrahydrochloride | 4.9 (mM) | |
6 | 1 | reservoir | 40 (%) |