1N6J
Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 14-BM-C |
| Synchrotron site | APS |
| Beamline | 14-BM-C |
| Temperature [K] | 101 |
| Detector technology | CCD |
| Detector | ADSC QUANTUM 4 |
| Spacegroup name | P 41 2 2 |
| Unit cell lengths | 70.140, 70.140, 151.880 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 30.000 * - 2.200 |
| R-factor | 0.243 |
| Rwork | 0.243 |
| R-free | 0.26800 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1egw |
| RMSD bond length | 0.007 * |
| RMSD bond angle | 1.090 * |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | CNS |
| Refinement software | CNS |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 30.000 | 2.280 |
| High resolution limit [Å] | 2.200 | 2.200 |
| Rmerge | 0.063 * | 0.319 * |
| Total number of observations | 364592 * | |
| Number of reflections | 18733 | |
| <I/σ(I)> | 38 | 4.4 |
| Completeness [%] | 92.7 * | 77.7 * |
| Redundancy | 19.5 | 4.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 17 * | PEG 3500, sodium cholride, BTP, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | PEG 3500 | ||
| 2 | 1 | 1 | sodium cholride | ||
| 3 | 1 | 1 | BTP | ||
| 4 | 1 | 1 | H2O | ||
| 5 | 1 | 2 | PEG 3500 | ||
| 6 | 1 | 2 | sodium cholride | ||
| 7 | 1 | 2 | H2O |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | reservoir | bis-Tris-propane | 50 (mM) | pH6.35-6.68 |
| 2 | 1 | reservoir | PEG1000 | 15 (%) | |
| 3 | 1 | reservoir | 50 (mM) | ||
| 4 | 1 | reservoir | 10 (mM) | ||
| 5 | 1 | reservoir | 5 (mM) | ||
| 6 | 1 | reservoir | glycerol | 10 (%) | |
| 7 | 1 | reservoir | dithiothreitol | 5 (mM) | |
| 8 | 1 | reservoir | spermine | 2 (mM) |






