1N5I
CRYSTAL STRUCTURE OF INACTIVE MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE (TMP) AT PH 4.6 (RESOLUTION 1.85 A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM30A |
Synchrotron site | ESRF |
Beamline | BM30A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-04-07 |
Detector | MARRESEARCH |
Wavelength(s) | 0.93 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 75.510, 75.510, 136.020 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 24.720 - 1.850 |
R-factor | 0.21 |
Rwork | 0.210 |
R-free | 0.23300 |
Structure solution method | OTHER |
Starting model (for MR) | 1gsi |
RMSD bond length | 0.005 |
RMSD bond angle | 1.170 * |
Data reduction software | DENZO |
Data scaling software | SCALA |
Phasing software | CNS (1.0) |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.720 | 1.950 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.066 * | 0.382 * |
Number of reflections | 20281 | |
<I/σ(I)> | 6.9 | 1.9 |
Completeness [%] | 99.8 | 98.8 |
Redundancy | 6.5 | 5.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 7.4 * | 293 | Soaking in 30mM ATP, 40% PEG 2000, 10 mM ammonium sulphate, 0.1 M sodium citrate pH 4.6, 25mM magnesium acetate, 2 mM mercaptoethanol, 3 mM EDTA, 1.5 mM DTT, VAPOR DIFFUSION, HANGING DROP, SOAKING |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 270000-392000 (nm) | |
2 | 1 | drop | TMP | 2 (mM) | |
3 | 1 | drop | dithiothreitol | 1 (mM) | |
4 | 1 | drop | EDTA | 2 (mM) | |
5 | 1 | drop | Tris-HCl | 15 (mM) | pH7.4 |
6 | 1 | reservoir | MES | 1.4 (M) | |
7 | 1 | reservoir | beta-mercaptoethanol | 2 (%(w/v)) | |
8 | 1 | reservoir | magnesium acetate | 0.1 (M) | pH6.0 |