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1N5I

CRYSTAL STRUCTURE OF INACTIVE MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE (TMP) AT PH 4.6 (RESOLUTION 1.85 A)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM30A
Synchrotron siteESRF
BeamlineBM30A
Temperature [K]100
Detector technologyCCD
Collection date2001-04-07
DetectorMARRESEARCH
Wavelength(s)0.93
Spacegroup nameP 65 2 2
Unit cell lengths75.510, 75.510, 136.020
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution24.720 - 1.850
R-factor0.21
Rwork0.210
R-free0.23300
Structure solution methodOTHER
Starting model (for MR)1gsi
RMSD bond length0.005
RMSD bond angle1.170

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Data reduction softwareDENZO
Data scaling softwareSCALA
Phasing softwareCNS (1.0)
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]24.7201.950
High resolution limit [Å]1.8501.850
Rmerge0.066

*

0.382

*

Number of reflections20281
<I/σ(I)>6.91.9
Completeness [%]99.898.8
Redundancy6.55.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

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7.4

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293Soaking in 30mM ATP, 40% PEG 2000, 10 mM ammonium sulphate, 0.1 M sodium citrate pH 4.6, 25mM magnesium acetate, 2 mM mercaptoethanol, 3 mM EDTA, 1.5 mM DTT, VAPOR DIFFUSION, HANGING DROP, SOAKING
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein270000-392000 (nm)
21dropTMP2 (mM)
31dropdithiothreitol1 (mM)
41dropEDTA2 (mM)
51dropTris-HCl15 (mM)pH7.4
61reservoirMES1.4 (M)
71reservoirbeta-mercaptoethanol2 (%(w/v))
81reservoirmagnesium acetate0.1 (M)pH6.0

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PDB entries from 2024-05-15

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