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1N47

Isolectin B4 from Vicia villosa in complex with the Tn antigen

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLURE BEAMLINE DW32
Synchrotron siteLURE
BeamlineDW32
Temperature [K]277
Detector technologyAREA DETECTOR
DetectorMARRESEARCH
Wavelength(s)0.93
Spacegroup nameP 43
Unit cell lengths85.510, 85.510, 153.650
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.700
R-factor0.19034
Rwork0.188
R-free0.23800

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)structure of unliganded lectin (from reference 1)
RMSD bond length0.014
RMSD bond angle1.700

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC (5.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.800
High resolution limit [Å]2.7002.700
Rmerge0.107

*

0.467

*

Total number of observations144637

*

Number of reflections30037
Completeness [%]99.899.8
Redundancy4.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.7291acetate, MPD , pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoiracetate170 (mM)pH4.7
21reservoirMPD18 (%)

237423

PDB entries from 2025-06-11

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