1MFZ
Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | RIGAKU RAXIS IV |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 131.173, 136.834, 218.562 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 2.800 |
R-factor | 0.2065 |
Rwork | 0.204 |
R-free | 0.26300 * |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.300 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | EPMR |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 94.691 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.065 | 0.217 |
Total number of observations | 151736 * | |
Number of reflections | 48049 | |
<I/σ(I)> | 16.7 | 4.4 |
Completeness [%] | 98.7 | 90 |
Redundancy | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 * | 323 | 10% PEG 3350, 20% isopropanol, 0.1 M Na citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 323K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | HEPES | 50 (mM) | pH7.5 |
2 | 1 | drop | dithiothreitol | 1.0 (mM) | |
3 | 1 | drop | protein | 7.5 (mg/ml) | |
4 | 1 | reservoir | PEG3350 | 10 (%) | |
5 | 1 | reservoir | 2-propanol | 20 (%) | |
6 | 1 | reservoir | sodium citrate | 0.1 (M) | pH5.6 |