1M6K
Structure of the OXA-1 class D beta-lactamase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE A1 |
Synchrotron site | CHESS |
Beamline | A1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1999-02-13 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.935 |
Spacegroup name | P 1 |
Unit cell lengths | 36.020, 51.620, 72.890 |
Unit cell angles | 70.19, 84.11, 81.51 |
Refinement procedure
Resolution | 75.000 * - 1.500 |
R-factor | 0.182 |
Rwork | 0.182 |
R-free | 0.20400 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB entries 1FOF and 1E4D |
RMSD bond length | 0.005 |
RMSD bond angle | 1.400 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | EPMR |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.550 |
High resolution limit [Å] | 1.500 * | 1.500 |
Rmerge | 0.049 | 0.123 |
Total number of observations | 183270 * | |
Number of reflections | 69838 * | 2979 * |
<I/σ(I)> | 23.6 | 5.9 |
Completeness [%] | 86.5 | 36.9 |
Redundancy | 2.62 * | 1.53 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | used macroseeding * |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | used macroseeding * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 2.5-3 (mg/ml) | |
2 | 1 | drop | PEG8000 | 10 (%) | |
3 | 1 | drop | HEPES | 0.05 (M) | pH7.5 |
4 | 1 | reservoir | PEG8000 | 20 (%) |