Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1M6K

Structure of the OXA-1 class D beta-lactamase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE A1
Synchrotron siteCHESS
BeamlineA1
Temperature [K]100
Detector technologyCCD
Collection date1999-02-13
DetectorADSC QUANTUM 4
Wavelength(s)0.935
Spacegroup nameP 1
Unit cell lengths36.020, 51.620, 72.890
Unit cell angles70.19, 84.11, 81.51
Refinement procedure
Resolution75.000

*

- 1.500
R-factor0.182
Rwork0.182
R-free0.20400

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB entries 1FOF and 1E4D
RMSD bond length0.005
RMSD bond angle1.400

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareEPMR
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.550
High resolution limit [Å]1.500

*

1.500
Rmerge0.0490.123
Total number of observations183270

*

Number of reflections69838

*

2979

*

<I/σ(I)>23.65.9
Completeness [%]86.536.9
Redundancy2.62

*

1.53

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5293used macroseeding

*

1VAPOR DIFFUSION, SITTING DROP7.5293used macroseeding

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein2.5-3 (mg/ml)
21dropPEG800010 (%)
31dropHEPES0.05 (M)pH7.5
41reservoirPEG800020 (%)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon