1M6H
Human glutathione-dependent formaldehyde dehydrogenase
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X12B |
Synchrotron site | NSLS |
Beamline | X12B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-02-21 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.9790,1.2770,1.2833,1.2882 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 78.620, 78.620, 309.659 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.000 |
R-factor | 0.187 |
Rwork | 0.185 |
R-free | 0.21800 |
Structure solution method | MAD |
RMSD bond length | 0.005 |
RMSD bond angle | 1.500 * |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.069 | 0.438 |
Total number of observations | 508528 * | |
Number of reflections | 64501 | |
<I/σ(I)> | 24 | 4.3 |
Completeness [%] | 96.1 | 87.6 |
Redundancy | 7.9 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 4 * | PEG 8000, Potassium phosphate, Zinc chloride, Dithiotreitol, pH 6.9, VAPOR DIFFUSION, SITTING DROP at 277K |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 4 * | PEG 8000, Potassium phosphate, Zinc chloride, Dithiotreitol, pH 6.9, VAPOR DIFFUSION, SITTING DROP at 277K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | enzyme | 15-20 (mg/ml) | |
2 | 1 | reservoir | potassium phosphate | 0.1 (M) | pH6.9-7.1 |
3 | 1 | reservoir | 0.100 (mM) | ||
4 | 1 | reservoir | dithiothreitol | 1 (mM) | |
5 | 1 | reservoir | PEG8000 | 12-15 (%) |