1LOT
CRYSTAL STRUCTURE OF THE COMPLEX OF ACTIN WITH VITAMIN D-BINDING PROTEIN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X8C |
Synchrotron site | NSLS |
Beamline | X8C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-06-30 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 80.171, 87.341, 159.584 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.500 |
Rwork | 0.226 |
R-free | 0.27500 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ENTRIES 1ATN AND 1J78 |
RMSD bond length | 0.007 * |
RMSD bond angle | 1.300 * |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.060 * | 0.276 * |
Total number of observations | 473796 * | |
Number of reflections | 39585 * | |
<I/σ(I)> | 15.2 | 4.5 |
Completeness [%] | 99.3 | 96.7 |
Redundancy | 12 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 * | 290 | PEG8000, cacodylate, calcium acetate, glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 12 (mg/ml) | |
10 | 1 | reservoir | glycerol | 10 (%) | |
2 | 1 | drop | Tris-HCl | 5 (mM) | |
3 | 1 | drop | sodium azide | 2 (mM) | |
4 | 1 | drop | EDTA | 1 (mM) | |
5 | 1 | drop | 2 (mM) | ||
6 | 1 | drop | ATP | 5 (mM) | pH7.6 |
7 | 1 | reservoir | calcium acetate | 0.1 (M) | |
8 | 1 | reservoir | cacodylate | 0.05 (M) | pH6.5 |
9 | 1 | reservoir | PEG8000 | 9 (%) |