1LDI
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2000-06-07 |
Detector | ADSC QUANTUM |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 96.053, 96.053, 184.195 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.700 |
R-factor | 0.229 * |
Rwork | 0.229 |
R-free | 0.26100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1fx8 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.260 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.081 | 0.322 |
Total number of observations | 64951 * | |
Number of reflections | 10918 | |
<I/σ(I)> | 14 | |
Completeness [%] | 87.5 | 83.2 |
Redundancy | 5.949 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | unknown * | 8.9 * | 298 | GLPF at 15-20 mg/ml, 100 mM Bicine, 28% (w/v) PEG 2000, 300mM MgCl2, 5 mMDTT, 15 % (v/v) xylose, 35 mM N-octyl-beta-D-glucoside, pH 9.50, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | 1 | protein | 15-20 (mg/ml) | |
2 | 1 | 2 | PEG2000 | 28 (%(w/v)) | |
3 | 1 | 2 | bicine | 100 (mM) | |
4 | 1 | 2 | glycerol | 15 (%(v/v)) | |
5 | 1 | 2 | n-octyl-beta-D-glucoside | 35 (mM) | |
6 | 1 | 2 | 300 (mM) | ||
7 | 1 | 2 | dithiothreitol | 5 (mM) |