Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1L1D

Crystal structure of the C-terminal methionine sulfoxide reductase domain (MsrB) of N. gonorrhoeae pilB

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]103
Detector technologyCCD
Collection date2001-07-21
DetectorADSC QUANTUM
Wavelength(s)0.9792, 0.9793, 0.9611
Spacegroup nameP 21 21 2
Unit cell lengths67.354, 68.078, 62.777
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution27.200 - 1.850
R-factor0.207

*

Rwork0.207
R-free0.23700

*

Structure solution methodMAD
RMSD bond length0.005
RMSD bond angle1.210
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.2001.920
High resolution limit [Å]1.8501.850
Rmerge0.0660.245
Total number of observations98562

*

Number of reflections22584
<I/σ(I)>22.34.6
Completeness [%]89.589.1

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

8.5298PEG 4000, Tris, cacodylate, glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein15 (mg/ml)
21dropTris20 (mM)pH8.5
31dropglycerol10 (%(v/v))
41reservoirsodium cacodylate0.1 (M)pH6.5
51reservoirPEG400030 (%(w/v))

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon