1KW9
Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution
Replaces: 1EIMExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-6A |
Synchrotron site | Photon Factory |
Beamline | BL-6A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2000-02-05 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.0 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 121.629, 121.629, 108.753 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 84.500 * - 1.950 |
R-factor | 0.1619 |
Rwork | 0.161 |
R-free | 0.18300 * |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.280 * |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | AMoRE |
Refinement software | REFMAC (5.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 84.500 * | 2.040 |
High resolution limit [Å] | 1.950 * | 1.940 |
Rmerge | 0.064 | |
Number of reflections | 28532 | |
<I/σ(I)> | 9.8 | |
Completeness [%] | 93.5 | 93.5 |
Redundancy | 12.0 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Batch method * | 7.5 | 12 * | Uragami, Y., (2001) J.Inorg.Biochem., 83, 269. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | 1 | protein | 10 (mg/ml) | |
2 | 1 | 1 | Tris-HCl | 100 (mM) | |
3 | 1 | 1 | ammonium sulfate | 27.7 (%sat) | |
4 | 1 | 1 | hexylene glycol | 18 (%(v/v)) |