1KV8
Crystal Structure of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.97625 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 123.470, 41.631, 90.633 |
Unit cell angles | 90.00, 97.20, 90.00 |
Refinement procedure
Resolution | 500.000 - 1.620 |
R-factor | 0.182 |
Rwork | 0.182 |
R-free | 0.19900 |
Structure solution method | MAD |
RMSD bond length | 0.004 |
RMSD bond angle | 1.303 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 500.000 | 1.670 |
High resolution limit [Å] | 1.620 | 1.620 |
Rmerge | 0.043 | 0.181 |
Total number of observations | 480987 * | |
Number of reflections | 8810 * | |
<I/σ(I)> | 39.8 | 5.8 |
Completeness [%] | 97.2 * | 90.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Batch method * | 7.5 * | 298 | 20% MePEG 5000, 100 mM sodium/potassium phosphate, 100 mM PIPES, pH 7.0, Micro-batch at 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | 1 | HEPES | 50 (mM) | pH7.5 |
2 | 1 | 1 | 5 (mM) | ||
3 | 1 | 1 | 100 (mM) | ||
4 | 1 | 1 | protein | 15 (mg/ml) | |
5 | 1 | 1 | MePEG5000 | 18 (%) | |
6 | 1 | 1 | sodium potassium phosphate | 50 (mM) | |
7 | 1 | 1 | bis-Tris-propane | 50 (mM) | pH7.0 |