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1KV8

Crystal Structure of 3-Keto-L-Gulonate 6-Phosphate Decarboxylase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 4
Wavelength(s)0.97625
Spacegroup nameC 1 2 1
Unit cell lengths123.470, 41.631, 90.633
Unit cell angles90.00, 97.20, 90.00
Refinement procedure
Resolution500.000 - 1.620
R-factor0.182
Rwork0.182
R-free0.19900
Structure solution methodMAD
RMSD bond length0.004
RMSD bond angle1.303
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]500.0001.670
High resolution limit [Å]1.6201.620
Rmerge0.0430.181
Total number of observations480987

*

Number of reflections8810

*

<I/σ(I)>39.85.8
Completeness [%]97.2

*

90.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Batch method

*

7.5

*

29820% MePEG 5000, 100 mM sodium/potassium phosphate, 100 mM PIPES, pH 7.0, Micro-batch at 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
111HEPES50 (mM)pH7.5
2115 (mM)
311100 (mM)
411protein15 (mg/ml)
511MePEG500018 (%)
611sodium potassium phosphate50 (mM)
711bis-Tris-propane50 (mM)pH7.0

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PDB entries from 2025-06-11

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