1JJ8
Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1995-09-01 |
Detector | RIGAKU |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 66.328, 68.693, 62.136 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.000 - 2.750 |
R-factor | 0.2134 |
Rwork | 0.213 |
R-free | 0.27710 |
Structure solution method | SIRAS |
Starting model (for MR) | SIRAS PHASES |
RMSD bond length | 0.009 |
RMSD bond angle | 19.410 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.870 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.081 * | 0.222 * |
Number of reflections | 3765 | |
<I/σ(I)> | 19.6 | 4.5 |
Completeness [%] | 96.5 | 91.6 * |
Redundancy | 15. * | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 4.6 | 21 * | 0.08 MM DNA, 0.04 MM HIN, 25 MM NA ACETATE (PH 4.6), 25 MM MGCL2, 8 MM NACL, 6.3% V/V PEG400, AND 1.25 MM NA CACODYLATE. RESERVOIR SOLUTION CONTAINS 100 MM NA ACETATE (PH 4.6), 100 MM MGCL2, AND 25% PEG400. CONCENTRATION OF PEG400 IN RESERVOIR SOLUTION WAS INCREASED IN 5% INCREMENTS TO 35%. CONDITIONS FOR NATIVE ARE THE SAME EXCEPT THE CONCENTRATION OF MGCL2 IS 5 TIMES SMALLER., pH 4.60, VAPOR DIFFUSION, HANGING DROP |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | DNA | ||
10 | 1 | 2 | PEG 400 | ||
2 | 1 | 1 | HIN | ||
3 | 1 | 1 | sodium acetate | ||
4 | 1 | 1 | MgCl2 | ||
5 | 1 | 1 | NaCl | ||
6 | 1 | 1 | PEG 400 | ||
7 | 1 | 1 | sodium cacodylate | ||
8 | 1 | 2 | sodium acetate | ||
9 | 1 | 2 | MgCl2 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | 20-100 (mM) | ||
2 | 1 | reservoir | 100 (mM) | pH4.6 | |
3 | 1 | reservoir | PEG400 | 25 (%) |