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1JJ8

Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1995-09-01
DetectorRIGAKU
Spacegroup nameC 2 2 21
Unit cell lengths66.328, 68.693, 62.136
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.000 - 2.750
R-factor0.2134
Rwork0.213
R-free0.27710
Structure solution methodSIRAS
Starting model (for MR)SIRAS PHASES
RMSD bond length0.009
RMSD bond angle19.410

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0002.870
High resolution limit [Å]2.7502.750
Rmerge0.081

*

0.222

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Number of reflections3765
<I/σ(I)>19.64.5
Completeness [%]96.591.6

*

Redundancy15.

*

4.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, sitting drop

*

4.621

*

0.08 MM DNA, 0.04 MM HIN, 25 MM NA ACETATE (PH 4.6), 25 MM MGCL2, 8 MM NACL, 6.3% V/V PEG400, AND 1.25 MM NA CACODYLATE. RESERVOIR SOLUTION CONTAINS 100 MM NA ACETATE (PH 4.6), 100 MM MGCL2, AND 25% PEG400. CONCENTRATION OF PEG400 IN RESERVOIR SOLUTION WAS INCREASED IN 5% INCREMENTS TO 35%. CONDITIONS FOR NATIVE ARE THE SAME EXCEPT THE CONCENTRATION OF MGCL2 IS 5 TIMES SMALLER., pH 4.60, VAPOR DIFFUSION, HANGING DROP
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111DNA
1012PEG 400
211HIN
311sodium acetate
411MgCl2
511NaCl
611PEG 400
711sodium cacodylate
812sodium acetate
912MgCl2
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoir20-100 (mM)
21reservoir100 (mM)pH4.6
31reservoirPEG40025 (%)

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PDB entries from 2024-05-15

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