1JJ6
Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations.
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X12C |
Synchrotron site | NSLS |
Beamline | X12C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1999-06-01 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 86.796, 82.120, 45.234 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.300 |
R-factor | 0.238 |
Rwork | 0.238 |
R-free | 0.28070 |
Structure solution method | MIRAS |
Starting model (for MR) | MIRAS PHASES |
RMSD bond length | 0.011 |
RMSD bond angle | 18.160 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.400 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.067 * | 0.190 * |
Number of reflections | 6695 | |
<I/σ(I)> | 21.07 | 6.34 |
Completeness [%] | 89.5 | 55.3 * |
Redundancy | 43 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 8.5 | 4 * | Hanging drop vapor diffusion at 4C, with initial concentration in drop of 0.13 mM DNA, 0.33 mM Hin, 46 mM Tris (pH 8.5), 46 mM CaCl2, 63 mM NaCl, 11.6% v/v PEG400, and 2.03 mM Na cacodylate. Reservoir solution contains 100 mM Tris (pH 8.5), 100 mM CaCl2, 100 mM NaCl, and 25% PEG400. Concentration of PEG400 in reservoir solution was increased in 5% increments to 35%., VAPOR DIFFUSION, HANGING DROP, temperature 280K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | DNA | ||
10 | 1 | 2 | NaCl | ||
11 | 1 | 2 | PEG 400 | ||
2 | 1 | 1 | HIN | ||
3 | 1 | 1 | Tris | ||
4 | 1 | 1 | CaCl2 | ||
5 | 1 | 1 | NaCl | ||
6 | 1 | 1 | PEG 400 | ||
7 | 1 | 1 | sodium cacodylate | ||
8 | 1 | 2 | Tris | ||
9 | 1 | 2 | CaCl2 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | 100 (mM) | pH8.5 | |
2 | 1 | reservoir | PEG400 | 25 (%) |