1IYB
Crystal Structure of the Nicotiana glutinosa Ribonuclease NW
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | OXFORD PX210 |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 44.800, 94.300, 98.100 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.400 * - 1.500 |
Rwork | 0.212 |
R-free | 0.23000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dix |
RMSD bond length | 0.005 |
RMSD bond angle | 23.400 * |
Data reduction software | d*TREK |
Data scaling software | d*TREK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.400 * | 1.550 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.052 | 0.201 |
Number of reflections | 62367 | |
<I/σ(I)> | 28.6 | 2.7 |
Completeness [%] | 93.2 | 53.8 |
Redundancy | 5.6 | 1.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 * | 18 * | ammonium dihydrogen, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | drop | sodium phosphate | 10 (mM) | pH7.0 |
3 | 1 | reservoir | 5'-GMP | 10 (mM) |