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Crystal structure of DNA photolyase from Thermus thermophilus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44B2 |
Synchrotron site | SPring-8 |
Beamline | BL44B2 |
Temperature [K] | 298 |
Detector technology | CCD |
Collection date | 2000-03-03 |
Detector | MARRESEARCH |
Wavelength(s) | 0.7 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 112.890, 112.890, 142.635 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 25.000 - 2.100 |
R-factor | 0.214 * |
Rwork | 0.214 |
R-free | 0.25100 |
Structure solution method | SIRAS |
RMSD bond length | 0.060 |
RMSD bond angle | 1.200 |
Data reduction software | MOSFLM |
Data scaling software | CCP4 ((SCALA)) |
Phasing software | MLPHARE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.210 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.061 | 0.277 |
Number of reflections | 28567 | |
Completeness [%] | 89.5 | 74 |
Redundancy | 3.8 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 4.6 | 298 | sodium acetate, Ammonium phosphate, lithium sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
1 | Vapor diffusion * | 4.6 | 298 | sodium acetate, Ammonium phosphate, lithium sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | sodium acetate | 100 (mM) | pH4.6 |
2 | 1 | reservoir | ammonium dihydrogen phosphate | 1.0 (M) | |
3 | 1 | reservoir | 100 (mM) |