1IPA
CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE
Experimental procedure
| Experimental method | MAD |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL41XU |
| Synchrotron site | SPring-8 |
| Beamline | BL41XU |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Detector | MARRESEARCH |
| Wavelength(s) | 0.97951, 0.979242, 0.982049, 0.975887 |
| Spacegroup name | P 43 21 2 |
| Unit cell lengths | 66.729, 66.729, 125.684 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 19.000 - 2.400 |
| R-factor | 0.226 * |
| Rwork | 0.226 |
| R-free | 0.28600 |
| Structure solution method | MAD |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.300 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | SHARP |
| Refinement software | CNS |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 40.000 | 2.450 |
| High resolution limit [Å] | 2.400 | 2.400 |
| Rmerge | 0.051 | 0.204 |
| Total number of observations | 130341 * | |
| Number of reflections | 12905 * | |
| <I/σ(I)> | 10.7 | 3.3 |
| Completeness [%] | 98.3 | 98.6 |
| Redundancy | 10.1 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 0.7M ammonium sulfate, 1.7% 2-propanol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 0.7M ammonium sulfate, 1.7% 2-propanol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 15 (mg/ml) | |
| 2 | 1 | reservoir | dioxane | 6.0 (%) |






