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1I8M

CRYSTAL STRUCTURE OF A RECOMBINANT ANTI-SINGLE-STRANDED DNA ANTIBODY FRAGMENT COMPLEXED WITH DT5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X8C
Synchrotron siteNSLS
BeamlineX8C
Temperature [K]173
Detector technologyCCD
Collection date1999-09-21
DetectorADSC QUANTUM 4
Wavelength(s)0.979
Spacegroup nameP 65 2 2
Unit cell lengths171.840, 171.840, 144.568
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution27.660 - 2.100
R-factor0.219

*

Rwork0.220
R-free0.25830
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1mlc
RMSD bond length0.011
RMSD bond angle27.374

*

Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.0002.180
High resolution limit [Å]2.1002.100
Rmerge0.0790.294
Total number of observations489562

*

Number of reflections72520
<I/σ(I)>19.33.6
Completeness [%]98.8

*

95.9

*

Redundancy6.83.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP522

*

2 M ammonium sulfate, 0.1 M sodium acetate, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
1VAPOR DIFFUSION, SITTING DROP522

*

2 M ammonium sulfate, 0.1 M sodium acetate, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111ammonium sulfate
211sodium acetate
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropDNA-114 (mg/ml)
21dropdT55 (M)excess
31reservoirsodium acetate0.1 (M)
41reservoirammonium sulfate1.8-2.0 (M)pH4.8-5.2

245663

PDB entries from 2025-12-03

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