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1HY5

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF YOPE-YERSINIA PESTIS GAP EFFECTOR PROTEIN.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2000-10-05
DetectorMAR scanner 345 mm plate
Wavelength(s)1.5418
Spacegroup nameC 1 2 1
Unit cell lengths62.692, 71.978, 62.684
Unit cell angles90.00, 113.06, 90.00
Refinement procedure
Resolution100.000 - 2.250
R-factor0.1761
Rwork0.197
R-free0.23830
Structure solution methodMAD
RMSD bond length0.007
RMSD bond angle1.400

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.000

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2.330
High resolution limit [Å]2.2502.250
Rmerge0.060

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0.221

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Number of reflections22062

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<I/σ(I)>164
Completeness [%]98.9

*

96.2
Redundancy2.3

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1.8

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

7

*

300Ammonium sulphate, bicine, potassium nitrate, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirammonium sulfate1.2-1.6 (M)
21reservoirHEPES100 (mM)pH7.0(or Bicine pH9.0)
31reservoirpotassium nitrate100-200 (mM)

246031

PDB entries from 2025-12-10

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